Selected Publications

Statistically robust modeling of protein dynamics.
MSMBuilder: Statistical Models for Biomolecular Dynamics.

Allosteric pathways in imidazole glycerol phosphate synthase
Proceedings of the National Academy of Sciences of the United States of America

Recent Publications

More Publications

  • Optimized parameter selection reveals trends in Markov state models for protein folding

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  • MSMBuilder: Statistical Models for Biomolecular Dynamics

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  • Osprey: Hyperparameter Optimization for Machine Learning

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Recent Posts

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Projects

A few of my current & past projects

Kinase simulations

Kinetics and thermodynamics of Protein Kinases.

Software Development

Development of software for analyzing and making MSMs.

Advanced Sampling

Faster sampling via Markov decision processes(MDP) and Reinforcement-Learning.

ML & MSMs

Improved markov modeling across multiple sequences.

Teaching

I have been a teaching instructor for the following courses at Stanford University:

  • CHEM36: Organic Chemistry Lab I
  • CHEM31B: Chemical Principles II

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